Academic article

• Kute, Preeti; Pauzin, Francois Philippe; Labun, Kornel et al. (2025). Transcriptome-wide mapping of small ribosomal subunits elucidates scanning mechanisms of translation initiation in the mammalian brain. (external link)
• Labun, Kornel; Rio, Oline Eriksen; Tjeldnes, Håkon et al. (2025). CHOPOFF: symbolic alignments enable fast and sensitive CRISPR off-target detection. (external link)
• Mamia, Katariina Aino Inkeri; Kolbeinsdottir, Solrun; Labun, Kornel et al. (2025). Precision T cell correction platform for Inborn Errors of Immunity. (external link)
• Bizuayehu, Teshome Tilahun; Labun, Kornel; Jakubec, Martin et al. (2022). Long-read single-molecule RNA structure sequencing using nanopore. (external link)
• Tjeldnes, Håkon; Labun, Kornel; Cleuren, Yamila Nicole Torres et al. (2021). ORFik: a comprehensive R toolkit for the analysis of translation. (external link)
• Labun, Kornel; Krause, Maximilian; Cleuren, Yamila Nicole Torres et al. (2021). CRISPR Genome Editing Made Easy Through the CHOPCHOP Website. (external link)
• Chyzynska, Katarzyna; Labun, Kornel; Jones, Carl Matthew et al. (2021). Deep conservation of ribosome stall sites across RNA processing genes. (external link)
• Reint, Ganna; Li, Zhuokun; Labun, Kornel et al. (2021). Rapid genome editing by CRISPR-Cas9-POLD3 fusion. (external link)
• Krause, Maximilian; Niazi, Adnan Muhammad; Labun, Kornel et al. (2019). tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing. (external link)
• Labun, Kornel; Montague, Tessa G.; Krause, Maximilian et al. (2019). CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing. (external link)
• Labun, Kornel; Guo, Xiaoge; Chavez, Alejandro et al. (2019). Accurate analysis of genuine CRISPR editing events with ampliCan. (external link)
• Valen, Eivind; Labun, Kornel; Montague, Tessa G. et al. (2016). CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering. (external link)
• Stokowy, Tomasz; Garbulowski, Mateusz; Fiskerstrand, Torunn et al. (2016). RareVariantVis: New tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data. (external link)

Poster

• Haugen, Frida Loe; Mamia, Katariina Aino Inkeri; Rio, Oline Eriksen et al. (2025). CRISPR/Cas9-based pipeline to introduce custom edits in autologous T cells. (external link)
• Haugen, Frida Loe; Mamia, Katariina Aino Inkeri; Rio, Oline Eriksen et al. (2025). CRISPR-Cas9 pipeline for custom editing in autologous T cells. (external link)
• Mamia, Katariina Aino Inkeri; Kolbeinsdottir, Solrun; Li, Zhuokun et al. (2024). CRISPR/Cas9 T cell editing pipeline for monogenic primary immunodeficiency disorders. (external link)
• Mamia, Katariina Aino Inkeri; Kolbeinsdottir, Solrun; Li, Zhuokun et al. (2024). CRISPR/Cas9 T cell editing pipeline for monogenic primary immunodeficiency disorders. (external link)
• Mamia, Katariina Aino Inkeri; Kolbeinsdottir, Solrun; Li, Zhuokun et al. (2024). CRISPR/Cas9 T cell editing pipeline for monogenic primary immunodeficiency disorders. (external link)
• Rio, Oline Eriksen; Komisarczuk, Anna Zofia; Labun, Kornel et al. (2023). CRISPR-Cas9 corrected T cells for personalized primary immunodeficiency disease (PIDD) therapy. (external link)
• Rio, Oline Eriksen; Komisarczuk, Anna Zofia; Labun, Kornel et al. (2023). CRISPR-Cas9 corrected T cells for personalized primary immunodeficiency disease (PIDD) therapy. (external link)
• Rio, Oline Eriksen; Haapaniemi, Emma Maria; Komisarczuk, Anna Zofia et al. (2023). CRISPR-Cas9 corrected T cells for personalized primary immunodeficiency disease (PIDD) therapy. (external link)
• Mamia, Katariina Aino Inkeri; Saarela, Janna Saija; Li, Zhuokun et al. (2022). CRISPR-Cas9 T cell editing pipeline for Finnish founder diseases. (external link)

Lecture

• Reint, Ganna; Li, Zhuokun; Labun, Kornel et al. (2022). Rapid genome editing by CRISPR-Cas9-POLD3 fusion.. (external link)

Doctoral dissertation

• Labun, Kornel (2020). In silico design and analysis of targeted genome editing with CRISPR. (external link)

See a complete overview of publications in Cristin.