Yehia Mokhtar Farag
Position
PhD candidate, Computational Biology Unit (CBU) ,PROBE
Affiliation
Research groups
Work
PeptideShaker Online
A user-friendly web-based framework for the identification of mass spectrometry-based proteomics data, from raw file conversion to interactive visualization of the resulting data.
CSF-PR
CSF Proteome Resource (CSF-PR) is an online repository of mass spectrometry based proteomics experiments on human cerebrospinal fluid (CSF). The system includes novel approaches for filtering, visualizing and comparing quantitative proteomics information in an interactive and user-friendly environment.
DiVA-omics
DiVA-omics is a proof-of-concept web-based interactive visual analysis system for the analysis of quantitative omics datasets. It is straightforward to use and does not require any advanced bioinformatics skills.
Publications
Academic article
- Farag, Yehia Mokhtar; Horro Marcos, Carlos; Vaudel, Marc et al. (2021). PeptideShaker Online: A User-Friendly Web-Based Framework for the Identification of Mass Spectrometry-Based Proteomics Data. (external link)
- Aasebø, Elise; Mjaavatten, Olav; Vaudel, Marc et al. (2016). Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows. (external link)
- Guldbrandsen, Astrid; Farag, Yehia Mohamed Mokhtar; Kroksveen, Ann Cathrine et al. (2016). CSF-PR 2.0: an interactive literature guide to quantitative cerebrospinal fluid mass spectrometry data from neurodegenerative disorders. (external link)
- Farag, Yehia Mohamed Mokhtar; Berven, Frode; Jonassen, Inge et al. (2015). Distributed and interactive visual analysis of omics data. (external link)
- Guldbrandsen, Astrid; Vethe, Heidrun; Farag, Yehia Mohamed Mokhtar et al. (2014). In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). (external link)