Doctoral dissertation

• Sauter, Roland; Heiland, Ines (2025). Metabolites at Genome-Scale: Towards Genome-Scale Modeling Strategies for Metabolite Concentrations. (external link)
• Bockwoldt, Mathias; Heiland, Ines; Gossmann, Toni Ingolf et al. (2018). Sequence-Based Analysis of Eukaryotic Protein Evolution. (external link)

Academic article

• Hsieh, Yin-Chen; Bockwoldt, Mathias; Heiland, Ines (2025). ProTaxoVis—protein taxonomic visualisation of presence. (external link)
• Sharma, Suraj; Sauter, Roland; Hotze, Madlen et al. (2025). GEMCAT - a new algorithm for gene expression-based prediction of metabolic alterations. (external link)
• Sauter, Roland; Sharma, Suraj; Heiland, Ines (2024). Accounting for NAD Concentrations in Genome-Scale Metabolic Models Captures Important Metabolic Alterations in NAD-Depleted Systems. (external link)
• Høyland, Lena Elise; Linden, Magali R Van; Niere, Marc et al. (2024). Subcellular NAD+ pools are interconnected and buffered by mitochondrial NAD+. (external link)
• Egger, Anna-Sophia; Rauch, Eva; Sharma, Suraj et al. (2024). Linking metabolism and histone acetylation dynamics by integrated metabolic flux analysis of Acetyl-CoA and histone acetylation sites. (external link)
• Sharma, Suraj; Hsieh, Yin-Chen; Dietze, Jørn et al. (2022). Early Evolutionary Selection of NAD Biosynthesis Pathway in Bacteria. (external link)
• Dietze, Jørn; Pijkeren, Alienke van; Egger, Anna-Sophia et al. (2021). Natural isotope correction improves analysis of protein modification dynamics. (external link)
• Panitz, Verena; Končarević, Saša; Sadik, Ahmed et al. (2021). Tryptophan metabolism is inversely regulated in the tumor and blood of patients with glioblastoma. (external link)
• Mohapatra, Soumya R; Sadik, Ahmed; Sharma, Suraj et al. (2021). Hypoxia Routes Tryptophan Homeostasis Towards Increased Tryptamine Production. (external link)
• Prentzell, Mirja Tamara; Rehbein, Ulrike; Sandoval, Marti Cadena et al. (2021). G3BPs tether the TSC complex to lysosomes and suppress mTORC1 signaling. (external link)
• Pijkeren, Alienke Van; Dietze, Jørn; Brotons, Alejandro Sánchez et al. (2021). Combined metabolic and chemical (CoMetChem) labeling using stable isotopes - A strategy to reveal site-specific histone acetylation and deacetylation rates by LC-MS. (external link)
• Mohapatra, Soumya R.; Sadik, Ahmed; Tykocinski, Lars-Oliver et al. (2019). Hypoxia Inducible Factor 1α Inhibits the Expression of Immunosuppressive Tryptophan-2,3-Dioxygenase in Glioblastoma. (external link)
• Heberle, Alexander Martin; Navas, Patricia Razquin; Langelaar-Makkinje, Miriam et al. (2019). The PI3K and MAPK/p38 pathways control stress granule assembly in a hierarchical manner. (external link)
• Bockwoldt, Mathias; Houry, Dorothee; Niere, Marc et al. (2019). Identification of evolutionary and kinetic drivers of NAD-dependent signaling. (external link)
• Bockwoldt, Mathias; Heiland, Ines; Fischer, Karsten (2019). The evolution of the plastid phosphate translocator family. (external link)
• Afanasyeva, Arina; Bockwoldt, Mathias; Cooney, Christopher et al. (2018). Human long intrinsically disordered protein regions are frequent targets of positive selection. (external link)
• Adam, Isabell; Dewi, Dyah L.; Mooiweer, Joram et al. (2018). Upregulation of tryptophanyl-tRNA synthethase adapts human cancer cells to nutritional stress caused by tryptophan degradation. (external link)
• Schäuble, Sascha; Stavrum, Anne-Kristin; Bockwoldt, Mathias et al. (2017). SBMLmod: a Python-based web application and web service for efficient data integration and model simulation. (external link)
• Dewi, Dyah L; Mohapatra, Soumya R; Cabañes, Saioa Blanco et al. (2017). Suppression of indoleamine-2, 3-dioxygenase 1 expression by promoter hypermethylation in ER-positive breast cancer. (external link)
• Opitz, Christiane A.; Heiland, Ines (2015). Dynamics of NAD-metabolism: everything but constant. (external link)
• Heiland, Ines; Thedieck, K (2015). Nutrigenomics: Toward a cross-disciplinary understanding of nutrient-driven networks in health and disease: What can we learn from the study of cross-talk in complex protein kinase and metabolic networks?. (external link)
• Heiland, Ines (2014). Chemo Informatik: Was hat Tryptophan mit Krebs und Parkinson zu tun?. (external link)
• Wencke, Walter; Ketelsen, Bernd; Emmanuel, Gaquerel et al. (2014). Improving the accuracy of expression data analysis in time course experiments using resampling. (external link)
• Schmeisser, Kathrin; Mannsfeld, Johannes; Kuhlow, Doreen et al. (2013). Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide. (external link)
• Stavrum, Anne-Kristin; Heiland, Ines; Schuster, Stefan et al. (2013). Model of tryptophan metabolism, readily scalable using tissue-specific gene expression data. (external link)
• Schäuble, Sascha; Stavrum, Anne-Kristin; Puntervoll, Pål et al. (2013). Effect of substrate competition in kinetic models of metabolic networks. (external link)
• Heiland, Ines; Kaleta, Christoph (2012). Stoffwechselanalyse: Neue Wege im Labyrinth entdecken. (external link)

Interview

• Thode, Sunniva Katharina; Heiland, Ines (2025). Energisentrene i cellene holder oss friske. (external link)
• Thode, Sunniva Katharina; Heiland, Ines (2025). NAD og aldring: Dette skjer i cellene når vi blir eldre. (external link)

Academic lecture

• Heiland, Ines (2022). Kinetic regulation of NAD homeostasis. (external link)
• Heiland, Ines; Bockwoldt, Mathias; Puntervoll, Pål et al. (2016). Tissue specific models of Trp- and NAD-metabolism — insights into metabolic crosstalk.. (external link)
• Heiland, Ines; Bockwoldt, Mathias; Stavrum, Anne-Kristin et al. (2016). Tissue specific models of Tryptohan-metabolism — insights into metabolic crosstalk. (external link)
• Bockwoldt, Mathias; Heiland, Ines (2016). Phylogenetic Analysis of NAD biosynthesis and consumption. (external link)
• Bockwoldt, Mathias; Stavrum, Anne-Kristin; Gossmann, Toni I. et al. (2015). Dynamics of NAD-metabolism - everything but constant. (external link)
• Bockwoldt, Mathias; Heiland, Ines (2015). Phylogenetic Analysis of NAD biosynthesis and consumption. (external link)
• Walter, Wencke; Gaquerel, Emmanuel; Baldwin, Ian T. et al. (2014). Improving the analysis of high throughput time course data using modelling based approaches. (external link)
• Heiland, Ines (2013). Metabolic modelling: From networks to dynamics and back. (external link)

Academic literature review

• Ziegler, Mathias; Monnè, Magnus; Nikiforov, Andrey et al. (2021). Welcome to the Family: Identification of the NAD+ Transporter of Animal Mitochondria as Member of the Solute Carrier Family SLC25. (external link)
• Clarelli, Fabrizio; Liang, Jingyi; Martinecz, Antal et al. (2019). Multi-scale modeling of drug binding kinetics to predict drug efficacy. (external link)
• Strømland, Øyvind; Niere, Marc; Nikiforov, Andrey et al. (2019). Keeping the balance in NAD metabolism. (external link)

Editorial

• Zupanic, Anze; Bernstein, Hans Christopher; Heiland, Ines (2020). Systems biology – Current status and challenges. (external link)

Poster

• Gossmann, Toni Ingolf; Afanasyeva, Arina; Bockwoldt, Mathias et al. (2017). Human intrinsically long disordered protein regions are frequent targets of positive selection. (external link)
• Sauter, Roland; Heiland, Ines (2017). Arctic Marine Bioplastics. (external link)
• Sauter, Roland; Heiland, Ines (2016). Metabolic Modeling of Marine Biomass Conversion. (external link)
• Bockwoldt, Mathias; Heiland, Ines; Toni, Gossmann et al. (2016). Phylogenetic and simulation-based analysis of NAD metabolism. (external link)
• Bockwoldt, Mathias; Heiland, Ines (2015). Use of resampling to improve accuracy of data analysis in time course experiments. (external link)
• Stavrum, Anne-Kristin; Heiland, Ines; Schuster, Stefan et al. (2014). Predicting pathological metabolic changes using a kinetic model of tryptophan metabolism. (external link)
• Heiland, Ines; Brandes, Susanne; Stavrum, Anne-Kristin et al. (2014). NAD-metabolism and the circadian clock -- Unraveling contradictions. (external link)
• Heiland, Ines; Brandes, Susanne; Stavrum, Anne-Kristin et al. (2013). NAD-metabolism and the circadian clock. (external link)

Article in business/trade/industry journal

• Elliss, Carolyn; Rattei, Thomas; Heiland, Ines (2015). 50 Years of FEBS´ Education Training Awards. (external link)

See a complete overview of publications in Cristin.