Michael Dondrup
Position
Researcher, Researcher
Affiliation
- Computational Biology Unit
Short info
I am an experienced researcher in bioinformatics at CBU.
I have PhD in computer science with long-standing expertise in bioinformatics and genomics data analysis. Experienced in NGS pipelines, transcriptomics, variant calling, and reproducible workflows using Python, R, Snakemake, Perl.
I have PhD in computer science with long-standing expertise in bioinformatics and genomics data analysis. Experienced in NGS pipelines, transcriptomics, variant calling, and reproducible workflows using Python, R, Snakemake, Perl.
Teaching
BINF301 - I have been responsible for BINF301, Genome scale algorithms, spring semesters 20 - 24.
BINF201 - Introduction to Genomics (course responsible), upcoming lecture in autumn 2026
Publications
2012
- Andrea Christoforou; Michael Dondrup; Morten Mattingsdal et al. (2012). Linkage-disequilibrium-based binning affects the interpretation of GWASs. (external link)
- B Joseph; S Schork; Michael Dondrup et al. (2012). Repertoire and ex vivo expression of small non-coding RNAs in Neisseria meningitidis. (external link)
- Jessica Louise Ray; Michael Dondrup; Sejal Modha et al. (2012). Finding a needle in the virus metagenome haystack - micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire. (external link)
2024
- Terje Klemetsen; Bram Danneels; Sebastian Petters et al. (2024). D6.3 (M24) - Reports on the implementation of resources (an ELIXIR Norway ELIXIR3 deliverable). (external link)
- Malene Skuseth Slinning; Thaddaeus Mutugi Nthiga; Christiane Eichner et al. (2024). Major vault protein is partof an extracellular cement materialin the Atlantic salmon louse(Lepeophtheirus salmonis). (external link)
- Helena Marie Doherty Midtbø; Christiane Eichner; Lars Are Hamre et al. (2024). Salmon louse labial gland enzymes: implications for host settlement and immune modulation. (external link)
- Terje Klemetsen; Lars Grønvold; Michael Dondrup et al. (2024). D6.5 (M24) - Report on marine biodiversity resources (an ELIXIR Norway ELIXIR3 deliverable). (external link)
2021
- Zhaoran Zhou; Christiane Eichner; Frank Nilsen et al. (2021). A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis). (external link)
- Rasmus Skern-Mauritzen; Ketil Malde; Christiane Eichner et al. (2021). The salmon louse genome: Copepod features and parasitic adaptations. (external link)
- Sussie Dalvin; Christiane Eichner; Michael Dondrup et al. (2021). Roles of three putative salmon louse (Lepeophtheirus salmonis) prostaglandin E2synthases in physiology and host–parasite interactions. (external link)
2019
- Erna Irene Heggland; Christiane Eichner; Svein Isungset Støve et al. (2019). A scavenger receptor B (CD36)-like protein is a potential mediator of intestinal heme absorption in the hematophagous ectoparasite Lepeophtheirus salmonis. (external link)
- Hulda Hardardottir; Rune Male; Frank Nilsen et al. (2019). Chitin synthesis and degradation in Lepeophtheirus salmonis: Molecular characterization and gene expression profile during synthesis of a new exoskeleton. (external link)