As Head of department I have the overall responsibility for the activities of the department inlcuding research and education. 

My own field of research is bioinformatics - development and application of informatics methods for the analysis of molecular biology data. My interests include methods for the automatic discovery of patterns, data analysis, algorithms and machine learning applied on molecular biology data. The research in my group includes tight collaboration with experimental groups wihtin different fields of biological and medical research. I work with analysis of different types of data including DNA sequences (including genomes), protein sequences and structures, gene expression data, and data generated usiing high-throughput technologies, e.g., next-generation sequencing. My group is also engaged in development and applicationof methods for integration of data and tools within bioinformatics.

I teach mostly bioinformatics courses, but I have also been teaching user courses in informatics and operating systems.

2018

• Marta Eide; Xiaokang Zhang; Odd Andre Karlsen et al. (2018). Modelling The Chemical Defensome Networks - A Comparative Dynamic Visualisation Of The Involved Genes And Interactions In Two Fish Species And Humans. (external link)
• Xiaokang Zhang; Inge Jonassen (2018). EFSIS: Ensemble Feature Selection Integrating Stability. (external link)
• Nello Blaser; Eileen Marie Hanna; Morten Brun et al. (2018). Discovering pathway perturbations with topological edge set enrichment analysis (TESEA). (external link)

2013

• Susanne Balzer; Ketil Malde; Markus A. Grohme et al. (2013). Filtering duplicate reads from 454 pyrosequencing data. (external link)
• Rasmus Skern-Mauritzen; Ketil Malde; Francois Besnier et al. (2013). How does sequence variability affect de novo assembly quality?. (external link)
• Jon Ison; Matúš Kalaš; Inge Jonassen et al. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. (external link)

1997

• Alvis Brazma; Inge Jonassen; Ingvar Eidhammer et al. (1997). Relation patterns and their automatic discovery in biosequences. (external link)
• Ingvar Eidhammer; David Gilbert; Inge Jonassen et al. (1997). A constraint based structure description language for biosequences. (external link)

2006

• Anne Margrete Øyan; Trond Hellem Bø; Inge Jonassen et al. (2006). cDNA microarray analysis of non-selected cases of acute myeloid leukemia demonstrates distinct clustering independent of cytogenetic aberrations and consistent with morphological signs of differentiation. (external link)
• William R. Taylor; KA Lin; D Klose et al. (2006). Dynamic domain threading. (external link)
• Helga Salvesen; Trond Hellem Bø; Ingunn Marie Stefansson et al. (2006). Gene expression profiles identify an aggressive phenotype in endometrial carcinoma. (external link)

2008

• Gustavo De Souza; Hiwa Målen; Tina Søfteland et al. (2008). Validating divergent ORF annotation in M. tuberculosis datasets using LTQ-Orbitrap. (external link)
• Ketil Malde; Inge Jonassen (2008). Repeats and EST analysis for new organisms. (external link)
• Gustavo Antonio De Souza; Hiwa Målen; Tina Søfteland et al. (2008). High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example. (external link)

2003

• Ole Johan Halvorsen; Anne Margrete Øyan; Trond Hellem Bø et al. (2003). Gene expression profiling in prostate cancer: cluster analysis and association with tumor differentation. (external link)
• Karl-Henning Kalland; Anne Margrete Øyan; Lars A. Akslen et al. (2003). Global analysis of gene expression and regulatory patterns in cancer. (external link)

2017

• Lina Wik Leiss; Ercan Mutlu; Anne Margrete Øyan et al. (2017). Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts. (external link)
• Anders Goksøyr; Malin Celander; Guttorm Alendal et al. (2017). dCod 1.0: decoding the systems toxicology of Atlantic cod (Gadus morhua). (external link)

2004

• Trond Hellem Bø; Bjarte Dysvik; Inge Jonassen (2004). LSimpute: accurate estimation of missing values in microarray data with least squares methods. (external link)

2000

• Jaak Vilo; Alvis Brazma; Inge Jonassen et al. (2000). Mining for putative regulatory elements in the yeast genome using gene expression data. (external link)
• Inge Jonassen (2000). Protein structure comparison and motif discovery. (external link)
• Inge Jonassen (2000). Protein Structure Motif Discovery. (external link)

2019

• Yaxin Xue; Inge Jonassen; Lise Øvreås et al. (2019). Bacterial and archaeal metagenome-assembled genome sequences from Svalbard permafrost. (external link)
• Marta Eide; Xiaokang Zhang; Odd Andre Karlsen et al. (2019). Chemical warfare in the aquatic environment - The chemical defensome networks of model fish species. (external link)
• Xiaokang Zhang; Inge Jonassen (2019). An Ensemble Feature Selection Framework Integrating Stability. (external link)

2014

• Ståle Nygård; Inge Jonassen (2014). The Norwegian Bioionformatics Platform. (external link)

2015

• Geir Bredholt; Monica Mannelqvist; Ingunn Stefansson et al. (2015). Tumor necrosis is an important hallmark of aggressive endometrial cancer and associates with hypoxia, angiogenesis and inflammation responses. (external link)
• Niklas Blomberg; Arlindo Oliveira; Barend Mons et al. (2015). The ELIXIR channel in F1000Research. (external link)

1996

• Alvis Brazma; Inge Jonassen; Ingvar Eidhammer et al. (1996). Approaches to the automatic discovery of patterns in biosequences. (external link)

1998

• Alvis Brazma; Inge Jonassen; Ingvar Eidhammer et al. (1998). Approaches to the automatic discovery of patterns in biosequences. (external link)

See a complete overview of publications in Cristin.

For publications, see also my https://scholar.google.com/citations?user=RqvFRN4AAAAJ&hl=no&oi=ao